Step 1: Verify the install
zypheron --version
zypheron doctor
Step 2: Install Python-side dependencies if needed
zypheron install-deps --all
Step 3: Check your tool inventory
zypheron tools check
zypheron tools list
zypheron tools list --missing
Step 4: Install critical tools if you want Zypheron to manage them
zypheron tools install-all --critical-only --yes
Step 5: Run a first workflow
zypheron
zypheron scan example.com --web
zypheron recon example.com
Why doctor matters
The repo positions zypheron doctor as the fastest way to validate runtimes, config, and environment health before you start debugging manually or widening the workflow.
Why start narrow
A narrow first run gives you better signal than a large chained workflow if your environment is still incomplete or you want tighter operator review.
Once your first-run checks are clean, the repo’s next useful commands are zypheron dork "admin panels" --ai-guided, zypheron chat "How would you approach this host?", zypheron workflow list, and zypheron autopent example.com.